Step-by-Step OrthoFinder Tutorials

If you’re new, follow OrthoFinder tutorials 1-3, which will guide you through running an example analysis and exploring the results.

Once you’re ready to run OrthoFinder on your own data read tutorial 4, which gives tips on best practices. You can then use tutorial 2 as a template for the steps to follow.

Getting Started

• 1. Downloading and running OrthoFinder

  5 minute read

• 2. Running an example OrthoFinder analysis

  3 minute read

• 3. Exploring OrthoFinder's results

  11 minute read

• 4. OrthoFinder best practices

  4 minute read

Supplemental

• A1. Alternative ways of getting OrthoFinder

  4 minute read

• A2. Getting OrthoFinder input data

  less than 1 minute read

Using OrthoFinder for Comparative Genomics